Wrap Seurat ATAC clustering

This function allows you to perform standard sc-ATAC clustering

ATAC_Wrapper(MTX, res = 0.3, dim1 = 1, dim2 = 20)

Arguments

MTX

sparse Matrix of class "dgCMatrix", each row is a peak, each column is a cell,

res

clustering resolution, default=0.5

Value

this returns seurat object with ATAC clustering

Examples

bmmc.filtered.atac<-SeuratLSIClustering(PeakVSCell.filtered.Mtx) #each row is a peak, each column is a cell,
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'object' in selecting a method for function 'SeuratLSIClustering': object 'PeakVSCell.filtered.Mtx' not found