Compute distances for binary distances

Compute distances for binary distances

Usage

BinaryDist(M, method = "Jaccard")

Arguments

M

the binary matrix, Each row is a cell, each column is a variant, generated by Make_matrix

method

distance method, choose from Jaccard, Dice, 3WJaccard, Simpson, Kulczynski2, Ochiai, Hamming

Value

dist object

Examples

m <- Matrix::Matrix(c(1, 0, 1, 1, 0, 1), nrow = 3, sparse = TRUE)
d.Jaccard <- BinaryDist(m, method = "Jaccard")
#> Loading required package: Matrix