DE.gettripple

This function is to prepare the data format that is used to differentially expression calling. It include the raw matrix; data.info and size effect

Usage

DE.gettripple(datapair, cpcol, withscran = F)

Arguments

datapair

tyhe datapair generated from datapair.mk

cpcol

The column name for comparison.

withscran

if true, use deconvolution to calculate size effect.

Value

This will return .tri.dummy file that is the input for DE analysis

Examples

if (FALSE) {
ROCKvsnorock.endo.tri.dummy <- DE.gettripple(ROCKvsnorock.endo.paired, cpcol = "name")
}