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Wrap Seurat RNA clustering

Source: R/clustering_functions.R
GEM_Wrapper.Rd

This function allows you to perform standard sc-RNA clustering

Usage

GEM_Wrapper(mtx = bmmc.data$`Gene Expression`, exp = "DN1_BMMC1", res = 0.5)

Arguments

mtx

sparse Matrix of class "dgCMatrix", each row is a gene, each column is a cell,

exp

The name of this sample/experiment

res

clustering resolution, default=0.5

Value

this returns seurat object with RNA clustering

Examples

if (FALSE) {
bmmc.data <- Read10X(data.dir = "XX/CellRanger/Donor01_BMMC_1/outs/filtered_feature_bc_matrix")
GEM_Wrapper(mtx = bmmc.data$`Gene Expression`, exp = "DN1_BMMC1")
}