Wrap Seurat RNA clustering

This function allows you to perform standard sc-RNA clustering

GEM_Wrapper(mtx = bmmc.data$`Gene Expression`, exp = "DN1_BMMC1", res = 0.5)

Arguments

mtx

sparse Matrix of class "dgCMatrix", each row is a gene, each column is a cell,

exp

The name of this sample/experiment

res

clustering resolution, default=0.5

Value

this returns seurat object with RNA clustering

Examples

bmmc.data=Read10X(data.dir = "XX/CellRanger/Donor01_BMMC_1/outs/filtered_feature_bc_matrix")
#> Error in Read10X(data.dir = "XX/CellRanger/Donor01_BMMC_1/outs/filtered_feature_bc_matrix"): could not find function "Read10X"
docluster_GEM(mtx=bmmc.data$`Gene Expression`,exp="DN1_BMMC1")
#> Error in docluster_GEM(mtx = bmmc.data$`Gene Expression`, exp = "DN1_BMMC1"): could not find function "docluster_GEM"