Function to generate GTS summary — GTSummary • redeemR

This function allows you to summarize the meta data for each genotyped variant

Usage

GTSummary(RawGenotypes, filterN = T)

Arguments

RawGenotypes: Well-named "RawGenotypes.Sensitive.StrandBalance" file in function redeemR.read or CW_mgatk.read
filterN: Boolean variable, if true filter out the variant with "N"

Value

Genotypes.summary a dataframe that summarize several metrics for each genotype

Details

Usually used inside redeemR.read() or CW_mgatk.read().