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Define a function to make a list, each contains the cell names for a node

Source: R/buid_tree.R
Make_Cells4Nodes.Rd

Define a function to make a list, each contains the cell names for a node

Usage

Make_Cells4Nodes(
  tr = DN4_SLCT_HSC_w_jaccard.njtree@phylo,
  min.node.size = 10,
  max.node.fra = 0.33
)

Arguments

tr

phylo object (ape)

min.node.size

default is 10, only the nodes with more than 10 tips are included ( # Minimum # tips in the node to be included)

max.node.fra

default is 0.33, only consider the nodes with less than max.node.fra*total cell number (# The up limit of the node size(Fraction of all tips) to be considered)

Value

return a list each contains the cell names for a node that meets the criteria