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SeuratLSIClustering This will use the mito variants for Seurat clustering (LSI based)

Source: R/buid_tree.R
SeuratLSIClustering-redeemR-method.Rd

SeuratLSIClustering This will use the mito variants for Seurat clustering (LSI based)

Usage

# S4 method for redeemR
SeuratLSIClustering(
  object,
  binary = T,
  res = 0.6,
  lsidim = 2:50,
  rmvariants = c("Variants310TC", "Variants3109TC", "Variants5764CT")
)

Arguments

binary

Default is tree, to make use of the binary matrix

res

Default os 0.3, the resolution of the clustering

redeemR

class

Value

redeemR class