add_prop_2_3_to_redeemR

Add per-variant QC features from redeemR@GTsummary.filtered into redeemR@V.fitered. For each variant, compute and join:

• prop_2_3: fraction of cells with mtUMI counts equal to 2 or 3

• mean_umi_gt1: mean mtUMI counts among cells with counts > 1

Usage

add_prop_2_3_to_redeemR(redeemR)

Arguments

redeemR

A redeemR object with slots @GTsummary.filtered and @V.fitered.

Value

The input redeemR with columns prop_2_3 and mean_umi_gt1

joined into @V.fitered by Variants.

Examples

if (FALSE) {
redeemR <- add_prop_2_3_to_redeemR(redeemR)
}