Major redeem class that store clonal-resolved multi-omics

Major redeem class that store clonal-resolved multi-omics

Slots

GTsummary.raw

The Mitochondrial genotype data frame, unfiltered

V.raw

is data frame of variant metrics, unfiltered

GTsummary.filtered

The Mitochondrial genotype data frame

CellMeta

Store meta data for each cell type

V.fitered

is data frame of variant metrics, VAF, cellN, etc (each for different stringency),

UniqueV

A character showing the number of usable variant

Cts.Mtx

A sparse matrix cell-mitoVariants, store the variant count

Cts.Mtx.bi

A sparse matrix cell-mitoVariants, The variant count has been binarized into 0 and 1

Ctx.Mtx.depth

A sparse matrix cell-mitoVariants(total counts for each position), store the variant count

para

A character showing the parameter of this object

Seurat

Seurat object storing the clonal clustering results

DataToplotList

The customized class of Datatoplots: A list of dataframe for further plotting

DistObjects

The customized class that stores the cell-cell distances

TREE

The customized class that wraps phylogenetic tree