Update redeemR object from GTsummary.filtered (helper) — update_redeemR_from

Synchronizes @V.fitered with @GTsummary.filtered: keeps only present variants, computes per‑variant summaries (CellN, PositiveMean, PositiveMean_cts, maxcts, CV, TotalVcount), merges them into @V.fitered, updates @CellMeta and @UniqueV, and rebuilds matrices and depth matrix.

Usage

update_redeemR_from_GTsummary(
  redeemR_obj,
  QualifiedTotalCts = NULL,
  update_depth_matrix = TRUE
)

Arguments

redeemR_obj: A redeemR object with a populated @GTsummary.filtered.
QualifiedTotalCts: Optional “QualifiedTotalCts” table passed to Add_DepthMatrix_filter2.

Value

The updated redeemR object.

Examples

# ob@GTsummary.filtered <- dplyr::filter(ob@GTsummary.filtered, Freq >= 2)
# ob <- update_redeemR_from_GTsummary(ob)